GAUDON Virginie

email : virginie.gaudon[remplacer_par_at]cnrs-orleans.fr

Phone : +33 2.38.25.55.64

Technician biologist within the thematic group DNA repair: structure, fonction and dynamic

 



5 documents

Article dans une revue

  • Sascha Trapp, Denis Soubieux, Alexandra Lidove, Evelyne Esnault, Adrien Lion, et al.. Major contribution of the RNA-binding domain of NS1 in the pathogenicity and replication potential of an avian H7N1 influenza virus in chickens. Virology Journal, BioMed Central, 2018, 15 (1), ⟨10.1186/s12985-018-0960-4⟩. ⟨hal-01966420⟩
  • Sascha Trapp, Denis Soubieux, Alexandra Lidove, Evelyne Esnault, Adrien Lion, et al.. Major contribution of the RNA-binding domain of NS1 in the pathogenicity and replication potential of an avian H7N1 influenza virus in chickens. Virology Journal, BioMed Central, 2018, 15, pp.1-12. ⟨10.1186/s12985-018-0960-4⟩. ⟨hal-02626011⟩
  • R. Le Meur, Françoise Culard, V. Nadan, S. Goffinont, F. Coste, et al.. The nucleoid-associated protein HU enhances 8-oxoguanine base excision by the formamidopyrimidine-DNA glycosylase. Biochemical Journal, Portland Press, 2015, 471 (1), pp.13-23. ⟨10.1042/BJ20150387⟩. ⟨hal-01216639⟩
  • Norbert Garnier, Karine Loth, Franck Coste, Rafal Augustyniak, Virginie Nadan, et al.. An alternative flexible conformation of the E. coli HU beta(2) protein: structural, dynamics, and functional aspects. European Biophysics Journal, Springer Verlag (Germany), 2011, 40 (2), pp.117-129. ⟨10.1007/s00249-010-0630-y⟩. ⟨hal-00602370⟩

Poster

  • Alan Wacquiez, Franck Coste, Caroline Blondeau, Emmanuel Kut, Virginie Nadan, et al.. NS1 des virus Influenza A : approches structurales et fonctionnelles pour de nouvelles stratégies anti-virales. 20. Journées Francophones de Virologie 2018, Mar 2018, Paris, France. John Libbey Eurotext, Virologie, 22, 148 p., 2018. ⟨hal-02736544⟩

GUÉRIN Martine

email : martine.guerin[remplacer_par_at]cnrs-orleans.fr

Phone : +33 2.38.25.56.29

Lecturer within the thematic group DNA repair: structure, fonction and dynamic

 



25 documents

Article dans une revue

  • R. Le Meur, Françoise Culard, V. Nadan, S. Goffinont, F. Coste, et al.. The nucleoid-associated protein HU enhances 8-oxoguanine base excision by the formamidopyrimidine-DNA glycosylase. Biochemical Journal, Portland Press, 2015, 471 (1), pp.13-23. ⟨10.1042/BJ20150387⟩. ⟨hal-01216639⟩
  • A. Biela, F. Coste, F. Culard, M. Guerin, S. Goffinont, et al.. Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization. Nucleic Acids Research, Oxford University Press, 2014, 42 (16), pp.doi: 10.1093/nar/gku613. ⟨10.1093/nar/gku613⟩. ⟨hal-01175522⟩
  • Matthieu Fisichella, Hinda Dabboue, Sanjib Bhattacharyya, Gerald Lelong, Marie-Louise Saboungi, et al.. Uptake of Functionalized Mesoporous Silica Nanoparticles by Human Cancer Cells. Journal of Nanoscience and Nanotechnology, American Scientific Publishers, 2010, 10 (4), pp.314-2324. ⟨10.1166/jnn.2010.1917⟩. ⟨hal-00529333⟩
  • M. Picard, S. Morisset, J.F. Cloix, J.C. Bizot, M. Guerin, et al.. Pharmacological, neurochemical, and behavioral profile of JB-788, a new 5-HT1A agonist. Neuroscience, Elsevier - International Brain Research Organization, 2010, 169 (3), pp.1337-1346. ⟨10.1016/j.neuroscience.2010.05.040⟩. ⟨hal-02071835⟩
  • Matthieu Fisichella, Hinda Dabboue, Sanjib Bhattacharyya, Marie-Louise Saboungi, Jean-Paul Salvetat, et al.. Mesoporous silica nanoparticles enhance MTT formazan exocytosis in HeLa cells and astrocytes. Toxicology in Vitro, Elsevier, 2009, 23 (4), pp.697-703. ⟨10.1016/j.tiv.2009.02.007⟩. ⟨hal-02127511⟩
  • D Teschner, Laurence Pirault-Roy, D Naud, M Guerin, Z Paál. Methylcyclopentane reactions on Rh-Ge/Al2O3 catalysts prepared by controlled surface reaction. Applied Catalysis A: General, 2003, 252 (2), pp.421-426. ⟨10.1016/S0926-860X(03)00494-0⟩. ⟨hal-02497225⟩
  • A. Wootsch, Laurence Pirault-Roy, J. Leverd, M. Guerin, Z. Paál. Specific Behavior of Tailor-Made Pt–Ge/Al2O3 Catalysts in Transformation of Hydrocarbons. Chinese Journal of Catalysis, Elsevier, 2002, 208 (2), pp.490-493. ⟨10.1006/jcat.2002.3554⟩. ⟨hal-02497167⟩
  • Laurence Pirault-Roy, M Guerin, F Maire, P. Marecot, J. Barbier. Modelling of the metallic phases of different Pt–Rh/Al2O3–CeO2 catalysts: influence of the rhodium loading and nature of the metallic precursors. Applied Catalysis A: General, 2000, 199 (1), pp.109-122. ⟨10.1016/S0926-860X(99)00554-2⟩. ⟨hal-02497165⟩
  • F. ToulmÉ, M Guérin, N. Robichon, M. Leng, A. Rachid Rahmouni. In vivo evidence for back and forth oscillations of the transcription elongation complex. EMBO Journal, EMBO Press, 1999, 18 (18), pp.5052-5060. ⟨10.1093/emboj/18.18.5052⟩. ⟨hal-02127238⟩
  • N. Figueroa-Bossi, M Guérin, A. Rachid Rahmouni, M Leng, L Bossi. The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control. EMBO Journal, EMBO Press, 1998, 17 (8), pp.2359-2367. ⟨10.1093/emboj/17.8.2359⟩. ⟨hal-02127234⟩
  • Laurence Pirault-Roy, L Pirault, M Guerin, F Maire, P. Marecot, et al.. Catalytic activity and EXAFS characterisation of three way automative Pt–Rh/Al2O3–CeO2 catalysts from different preparations. Applied Catalysis A: General, 1998, 172 (2), pp.249-258. ⟨10.1016/S0926-860X(98)00131-8⟩. ⟨hal-02497164⟩
  • M Guerin, N. Robichon, J. Geiselmann, A. Rachid Rahmouni. A simple polypyrimidine repeat acts as an artificial Rho-dependent terminator in vivo and in vitro. Nucleic Acids Research, Oxford University Press, 1998, 26 (21), pp.4895-4900. ⟨10.1093/nar/26.21.4895⟩. ⟨hal-02127232⟩
  • Marc Boudvillain, Martine Guerin, Rozenn Dalbiès, Tula Saison-Behmoaras, Marc Leng. Transplatin-Modified Oligo(2‘- O -methyl ribonucleotide)s: A New Tool for Selective Modulation of Gene Expression †. Biochemistry, American Chemical Society, 1997, 36 (10), pp.2925 - 2931. ⟨10.1021/bi962695f⟩. ⟨hal-01880625⟩
  • M Guérin, M. Leng, A. Rachid Rahmouni. High resolution mapping of E.coli transcription elongation complex in situ reveals protein interactions with the non-transcribed strand.. EMBO Journal, EMBO Press, 1996, 15 (19), pp.5397-5407. ⟨hal-02127225⟩
  • G. Gillet, M. Guerin, A. Trembleau, G. Brun. A Bcl-2-related gene is activated in avian cells transformed by the Rous sarcoma virus.. EMBO Journal, EMBO Press, 1995, 14, pp.1372-1381. ⟨hal-00314336⟩
  • S Prost, Mg Lê, S Douc-Rasy, Jc Ahomadegbe, M Spielmann, et al.. Association of c-erbB2-gene amplification with poor prognosis in non-inflammatory breast carcinomas but not in carcinomas of the inflammatory type.. International Journal of Cancer, Wiley, 1994, 58 (6), pp.763-8. ⟨hal-02127521⟩
  • S. Prost, Mg Lê, S Douc-Rasy, M Gabillot, M Guérin, et al.. C-erbB2 gene amplification, an independent prognostic indicator in node-positive and node-negative breast cancers. European Journal of Cancer, Elsevier, 1993, 29 (supplément 6), pp.S58. ⟨10.1016/0959-8049(93)90915-3⟩. ⟨hal-02127573⟩
  • G. Gillet, D. Michel, P. Crisanti, M. Guerin, Y. Herault, et al.. Serum factors and v-src control two complementary mitogenic pathways in quail neuroretinal cells in culture.. Oncogene, Nature Publishing Group, 1993, 8, pp.565-574. ⟨hal-00314337⟩
  • Martine Guerin, Z. Sheng, N Andrieu, G Riou. Strong association between c-myb and oestrogen-receptor expression in human breast cancer.. Oncogene, Nature Publishing Group, 1990, 5 (1), pp.131-5. ⟨hal-02127528⟩
  • Martine Guerin, M Gabillot, M. Mathieu, J Travagli, M Spielmann, et al.. Structure and expression of c-erbB-2 and EGF receptor genes in inflammatory and non-inflammatory breast cancer: prognostic significance.. International Journal of Cancer, Wiley, 1989, 43 (2), pp.201-8. ⟨hal-02127536⟩
  • Martine Guerin, M. Barrois, M. Terrier, M Spielmann, G Riou. Overexpression of either c-myc or c-erbB-2/neu proto-oncogenes in human breast carcinomas: correlation with poor prognosis.. oncogene Research, 1988, 3 (1), pp.21-31. ⟨hal-02127547⟩
  • Z.M Sheng, Martine Guerin, M Gabillot, M Spielmann, G Riou. c-Ha-ras-1 polymorphism in human breast carcinomas: evidence for a normal distribution of alleles.. oncogene Research, 1988, 2 (3), pp.245-50. ⟨hal-02127541⟩
  • Martine Guerin, M. Barrois, G Riou. The expression of c-myb is strongly associated with the presence of estrogen and progesterone receptors in breast cancer. Comptes rendus de l’Académie des sciences. Série III, Sciences de la vie, Elsevier, 1988, 307 (20), pp.855-61. ⟨hal-02127559⟩
  • Martine Guerin, M.J Lacombe, G Riou. Analysis of the expression of the oncogene c-myc in human breast adenocarcinoma. Comptes rendus de l’Académie des sciences. Série III, Sciences de la vie, Elsevier, 1985, 301 (20), pp.833-8. ⟨hal-02127562⟩

Ouvrage (y compris édition critique et traduction)

  • Kadija Essalhi, L. Gellon, Julie Berthault, Françoise Culard, Martine Guerin, et al.. Ogg1, a Saccharomyces cerevisiae bifunctional DNA glycosylase involved in base excision repair of oxidative DNA damage, interacts with the replicative DNA polymerase, Pol epsilon. pp.409, 2011. ⟨hal-00614891⟩

GOFFINONT Stéphane

email : stephane.goffinont[remplacer_par_at]cnrs-orleans.fr

Phone : +33 2.38.25.55.49

Engineer in biological techniques within the thematic group DNA repair: structure, fonction and dynamic

 



21 documents

Article dans une revue

  • Zahira Tber, Nicolas Biteau, Luigi Agrofoglio, Julien Cros, Stéphane Goffinont, et al.. Microwave-Assisted Suzuki-Miyaura and Sonogashira Coupling of 4-Chloro-2-(trifluoromethyl)pyrido[1,2-e]purine Derivatives. European Journal of Organic Chemistry, Wiley-VCH Verlag, 2019, pp.5756-5767. ⟨10.1002/ejoc.201900921⟩. ⟨hal-02347523⟩
  • R. Le Meur, Françoise Culard, V. Nadan, S. Goffinont, F. Coste, et al.. The nucleoid-associated protein HU enhances 8-oxoguanine base excision by the formamidopyrimidine-DNA glycosylase. Biochemical Journal, Portland Press, 2015, 471 (1), pp.13-23. ⟨10.1042/BJ20150387⟩. ⟨hal-01216639⟩
  • Françoise Paquet, Olivier Delalande, Stephane Goffinont, Françoise Culard, Karine Loth, et al.. Model of a DNA-protein complex of the architectural monomeric protein MC1 from Euryarchaea. PLoS ONE, Public Library of Science, 2014, 9 (2), pp.e88809. ⟨10.1371/journal.pone.0088809⟩. ⟨hal-01063974⟩
  • A. Biela, F. Coste, F. Culard, M. Guerin, S. Goffinont, et al.. Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization. Nucleic Acids Research, Oxford University Press, 2014, 42 (16), pp.doi: 10.1093/nar/gku613. ⟨10.1093/nar/gku613⟩. ⟨hal-01175522⟩
  • Stephane Goffinont, Sandrine Villette, Melanie Spotheim-Maurizot. Alanine Screening Mutagenesis Establishes the Critical Inactivating Damage of Irradiated E. coli Lactose Repressor.. Radiation Research, Radiation Research Society, 2012, 177 (6), pp.738-42. ⟨hal-00721863⟩
  • Samia Aci-Sèche, Norbert Garnier, Stéphane Goffinont, Daniel Genest, Spotheim-Maurizot Mélanie, et al.. Comparing native and irradiated E. coli lactose repressor-operator complex by molecular dynamics simulation. European Biophysics Journal, Springer Verlag (Germany), 2010, 39 (10), pp.1375-1384. ⟨10.1007/s00249-010-0591-1⟩. ⟨hal-00529210⟩
  • Viktorie Stisova, Stéphane Goffinont, Mélanie Spotheim-Maurizot, Marie Davidkova. Effects of gamma irradiation on the DNA-protein complex between the estrogen response element and the estrogen receptor. Radiation Physics and Chemistry, Elsevier, 2010, 79 (8), pp.880-889. ⟨10.1016/j.radphyschem.2010.03.009⟩. ⟨hal-00529465⟩
  • Stéphane Goffinont, Marie Davídková, Mélanie Spotheim-Maurizot. Radiation-induced tetramer-to-dimer transition of Escherichia coli lactose repressor. Biochemical and Biophysical Research Communications, Elsevier, 2009, 386 (2), pp.300-304. ⟨10.1016/j.bbrc.2009.06.012⟩. ⟨hal-00522426⟩
  • Corinne Buré, Stéphane Goffinont, Agnès F. Delmas, Martine Cadene, Françoise Culard. Oxidation-sensitive residues mediate the DNA-bending activity of MC1 protein. Journal of Molecular Biology, Elsevier, 2008, 376 (1), pp.120-130. ⟨10.1016/j.jmb.2007.11.057⟩. ⟨hal-00283220⟩
  • Sonia Mazier, Sandrine Villette, Stéphane Goffinont, Stéphane Renouard, Jean-Claude Maurizot, et al.. Radiation Damage to a DNA-Binding Protein. Combined Circular Dichroism and Molecular Dynamics Simulation Analysis. Radiation Research, Radiation Research Society, 2008, 170 (5), pp.604-612. ⟨hal-00518177⟩
  • Mélanie Spotheim-Maurizot, Sonia Mazier, Sandrine Villette, Stéphane Goffinont, Dominique Genest, et al.. Radiationinduced oxidation of proteins in DNA-protein complexes. Radioprotection, EDP Sciences, 2008, 43 (5), pp.131-132. ⟨10.1051/radiopro:2008526⟩. ⟨hal-00527448⟩
  • Nathalie Gillard, Stephane Goffinont, Corinne Buré, Marie Davidkova, Jean-Claude Maurizot, et al.. Radiation-induced oxidative damage to the DNA-binding domain of the lactose repressor. Biochemical Journal, Portland Press, 2007, 403 (3), pp.463-472. ⟨10.1042/BJ20061466⟩. ⟨hal-00478672⟩
  • Nathalie Gillard, Stéphane Goffinont, Corinne Buré, Marie Davidkovà, Jean-Claude Maurizot, et al.. Radiation-induced oxidative damage to the DNA-binding domain of the lactose repressor. Biochemical Journal, Portland Press, 2007, 403 (3), pp.463-472. ⟨10.1042/BJ20061466⟩. ⟨hal-00159565⟩
  • Marie Davídková, Viktorie Stísová, Stéphane Goffinont, Nathalie Gillard, Bertrand Castaing, et al.. Modification of DNA radiolysis by DNA-binding proteins: structural aspects. Radiation Protection Dosimetry, Oxford University Press (OUP), 2006, 122 (1-4), pp.100-105. ⟨10.1093/rpd/ncl442⟩. ⟨hal-00168743⟩
  • Viktorie Stísová, Stephane Goffinont, Melanie Spotheim-Maurizot, Marie Davídková. Radiation damage to DNA–protein specific complexes: estrogen response element–estrogen receptor complex. Radiation Protection Dosimetry, Oxford University Press (OUP), 2006, 122 (1-4), pp.106-109. ⟨10.1093/rpd/ncl443⟩. ⟨hal-00159626⟩
  • Fabrice Agou, Fei Ye, Stéphane Goffinont, Gilles Courtois, Shoji Yamaoka, et al.. NEMO Trimerizes through Its Coiled-coil C-terminal Domain. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2002, 277 (20), pp.17464-17475. ⟨10.1074/jbc.M201964200⟩. ⟨hal-02112165⟩

Poster

  • Daniel Marc, Alan Wacquiez, Stéphane Goffinont, Virginie Nadan, Franck Coste, et al.. Interaction de la protéine NS1 des virus influenza A avec l’ARN : mécanismes impliqués dans la reconnaissance spécifique. 21. Journées Francophones de Virologie, Mar 2019, Lyon, France. Virologie, 23, 2019. ⟨hal-02737761⟩
  • Alan Wacquiez, Stéphane Goffinont, Virginie Nadan, Franck Coste, Emmanuel Kut, et al.. Structures et fonctions de la protéine NS1 des virus influenza pour la recherche de nouvelles cibles thérapeutiques. 31. Colloque Biotechnocentre, Oct 2018, Seillac, France. 2018. ⟨hal-02736195⟩
  • Alan Wacquiez, Franck Coste, Caroline Blondeau, Emmanuel Kut, Virginie Nadan, et al.. NS1 des virus Influenza A : approches structurales et fonctionnelles pour de nouvelles stratégies anti-virales. 20. Journées Francophones de Virologie 2018, Mar 2018, Paris, France. John Libbey Eurotext, Virologie, 22, 148 p., 2018. ⟨hal-02736544⟩
  • Alan Wacquiez, Stéphane Goffinont, Virginie Nadan, Franck Coste, Emmanuel Kut, et al.. NS1 des virus influenza : relations structure-fonction pour la recherche de nouveaux anti-viraux. 30. Colloque Biotechnocentre, Oct 2017, Seillac, France. 100 p., 2017. ⟨hal-02737987⟩

Chapitre d'ouvrage

  • Françoise Culard, Mélanie Spotheim-Maurizot, Corinne Bure, Stéphane Goffinont, Martine Cadene. A mass spectrometry approach for the identification of oxidation-sensitive residues in DNA-binding proteins: correlation with protein function. Pandey, A., Banerjee, R. Horizons in Biotechnology, Asiatech Publishers, New Delhi, pp.123-134, 2008. ⟨hal-00623581⟩

GARNIER Norbert

email : norbert.garnier[remplacer_par_at]cnrs-orleans.fr

Phone : +33 2.38.25.76.68

Lecturer within the thematic group DNA repair: structure, fonction and dynamic

 



34 documents

Article dans une revue

  • Abdennour Braka, Norbert Garnier, Pascal Bonnet, Samia Aci-Seche. Residence Time Prediction of Type 1 and 2 Kinase Inhibitors from Unbinding Simulations. Journal of Chemical Information and Modeling, American Chemical Society, 2019, 60 (1), pp.342-348. ⟨10.1021/acs.jcim.9b00497⟩. ⟨hal-02494409⟩
  • Laurent Jacob, Paul Sawma, Norbert Garnier, Lionel A.T. Meyer, Justine Fritz, et al.. Inhibition of PlexA1-mediated brain tumor growth and tumor-associated angiogenesis using a transmembrane domain targeting peptide. Oncotarget, Impact journals, 2016, ⟨10.18632/oncotarget.11072⟩. ⟨hal-01407022⟩
  • Widade Ziani, Antoine-P Maillard, Isabelle Petit-Härtlein, Norbert Garnier, Serge Crouzy, et al.. The X-ray structure of NccX from Cupriavidus metallidurans 31A illustrates potential dangers of detergent solubilization when generating and interpreting crystal structures of membrane proteins.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2014, 289 (45), pp.31160-31172. ⟨10.1074/jbc.M114.586537⟩. ⟨hal-01109416⟩
  • Alexia Arpel, Paul Sawma, Caroline Spenlé, Justine Fritz, Lionel Meyer, et al.. Transmembrane Domain Targeting Peptide Antagonizing ErbB2/Neu Inhibits Breast Tumor Growth and Metastasis.. Cell Reports, Elsevier Inc, 2014, 8 (6), pp.1714-1721. ⟨10.1016/j.celrep.2014.07.044⟩. ⟨hal-01071710⟩
  • Samia Aci-Sèche, Paul Sawma, Pierre Hubert, James N. Sturgis, Dominique Bagnard, et al.. Transmembrane Recognition of the Semaphorin Co-Receptors Neuropilin 1 and Plexin A1 : Coarse-Grained Simulations. PLoS ONE, Public Library of Science, 2014, 9 (5), pp.e97779. ⟨10.1371/journal.pone.0097779⟩. ⟨hal-01175479⟩
  • Violette Senille, Dominique Lelievre, Françoise Paquet, Norbert Garnier, Ned Lamb, et al.. The addressing fragment of mitogaligin: first insights into functional and structural properties.. ChemBioChem, Wiley-VCH Verlag, 2013, 14 (6), pp.711-20. ⟨10.1002/cbic.201200715⟩. ⟨hal-00817503⟩
  • Samia Aci-Seche, Monique Genest, Norbert Garnier. Ligand entry pathways in the ligand binding domain of PPAR gamma receptor. FEBS Letters, Wiley, 2011, 585 (16), pp.2599-2603. ⟨10.1016/j.febslet.2011.07.014⟩. ⟨hal-00624897⟩
  • Norbert Garnier, Karine Loth, Franck Coste, Rafal Augustyniak, Virginie Nadan, et al.. An alternative flexible conformation of the E. coli HU beta(2) protein: structural, dynamics, and functional aspects. European Biophysics Journal, Springer Verlag (Germany), 2011, 40 (2), pp.117-129. ⟨10.1007/s00249-010-0630-y⟩. ⟨hal-00602370⟩
  • Samia Aci-Sèche, Norbert Garnier, Stéphane Goffinont, Daniel Genest, Spotheim-Maurizot Mélanie, et al.. Comparing native and irradiated E. coli lactose repressor-operator complex by molecular dynamics simulation. European Biophysics Journal, Springer Verlag (Germany), 2010, 39 (10), pp.1375-1384. ⟨10.1007/s00249-010-0591-1⟩. ⟨hal-00529210⟩
  • Samia Aci-Seche, Norbert Garnier, Daniel Genest, Stéphane Bourg, Christophe Marot, et al.. Molecular Dynamics Empirical Approach for Generating a Small Set of Structures Representative of the Internal Flexibility of a Receptor. QSAR & Combinatorial Science, 2009, 28 (9), pp.959-968. ⟨hal-00521647⟩
  • Daniel Genest, Norbert Garnier, Alban Arrault, Christophe Marot, Luc Morin-Allory, et al.. Ligand-escape pathways from the ligand-binding domain of PPAR gamma receptor as probed by molecular dynamics simulations. European Biophysics Journal, Springer Verlag (Germany), 2008, 37, pp.369-379. ⟨10.1007/s00249-007-0220-9⟩. ⟨hal-00512476⟩
  • Oumarou Samna Soumana, Norbert Garnier, Monique Genest. Insight into the recognition patterns of the ErbB receptor family transmembrane domains: heterodimerization models through MD search. European Biophysics Journal, Springer Verlag (Germany), 2008, 37 (6), pp.851-864. ⟨10.1007/s00249-008-0293-0⟩. ⟨hal-00284330⟩
  • Oumarou Samna Soumana, Norbert Garnier, Monique Genest. Molecular dynamics simulation approach for the prediction of transmembrane helix–helix heterodimers assembly. European Biophysics Journal, Springer Verlag (Germany), 2007, 36 (8), pp.1071-1082. ⟨10.1021/jm0702175 S0022-2623(07)00217-8⟩. ⟨hal-00166544⟩
  • Pierre Aller, Norbert Garnier, Monique Genest. Transmembrane Helix Packing of ErbB/Neu Receptor in Membrane Environment: A Molecular Dynamics Study. Journal of biomolecular structure & dynamics, 2006, 24 (3), pp.209-228. ⟨hal-00111939⟩
  • O. Samna Soumana, P. Aller, Norbert Garnier, M. Genest. Transmembrane peptides from tyrosine kinase receptor. Mutation-related behavior in a lipid bilayer investigated by molecular dynamics simulations. Journal of biomolecular structure & dynamics, 2005, 23, pp.91-100. ⟨hal-00088672⟩
  • P. Aller, L. Voiry, Norbert Garnier, M. Genest. Molecular dynamics (MD) investigations of preformed structures of the transmembrane domain of the oncogenic Neu receptor dimer in a DMPC bilayer. Biopolymers, Wiley, 2005, 77, pp.184-197. ⟨hal-00088475⟩
  • Norbert Garnier, Serge Crouzy, Monique Genest. Molecular Dynamics Simulations of the Transmembrane Domain of the Oncogenic ErbB2 Receptor Dimer in a DMPC Bilayer. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2003, 21 (2), pp.179-200. ⟨10.1080/07391102.2003.10506916⟩. ⟨hal-02123803⟩
  • Nicolas Sajot, Norbert Garnier, Monique Genest. Dimer models for ErbB-2/neu transmembrane domains from molecular dynamics simulations. Theoretical Chemistry Accounts: Theory, Computation, and Modeling, Springer Verlag, 1999, 101 (1-3), pp.67-72. ⟨10.1007/s002140050408⟩. ⟨hal-02123800⟩
  • J-P Duneau, S. Crouzy, Norbert Garnier, Y. Chapron, M Genest. Molecular dynamics simulations of the ErbB-2 transmembrane domain within an explicit membrane environment: comparison with vacuum simulations.. Biophysical Chemistry, Elsevier, 1999, 76 (1), pp.35-53. ⟨hal-02123801⟩
  • J-P Duneau, Norbert Garnier, G Cremel, G Nullans, P. Hubert, et al.. Time resolved fluorescence properties of phenylalanine in different environments. Comparison with molecular dynamics simulation.. Biophysical Chemistry, Elsevier, 1998, 73 (1-2), pp.109-19. ⟨hal-02123796⟩
  • Norbert Garnier, Daniel Genest, Jean Pierre Duneau, Monique Genest. Molecular modeling of c-erbB2 receptor dimerization: Coiled-coil structure of wild and oncogenic transmembrane domains—Stabilization by interhelical hydrogen bonds in the oncogenic form. Biopolymers, Wiley, 1997, 42 (2), pp.157-168. 3.0.CO;2-M">⟨10.1002/(SICI)1097-0282(199708)42:2<157::AID-BIP5>3.0.CO;2-M⟩. ⟨hal-02123792⟩
  • Jean-Pierre Duneau, Norbert Garnier, Monique Genest. Insight into Signal Transduction: Structural Alterations in Transmembrane Helices Probed by Multi-1 ns Molecular Dynamics Simulations. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 1997, 15 (3), pp.555-572. ⟨10.1080/07391102.1997.10508966⟩. ⟨hal-02123789⟩
  • Norbert Garnier, D. Genest, M Genest. Correlated motions and propagation of the effect of a local conformational change in the transmembrane helix of the c-erb B2 encoded protein and its V659E mutant, studied by molecular dynamics simulations.. Biophysical Chemistry, Elsevier, 1996, 58 (3), pp.225-37. ⟨hal-02123788⟩
  • Norbert Garnier, Daniel Genest, Eric Hebert, Monique Genest. Influence of a Mutation in the Transmembrane Domain of the pl85 c- erb B2 Oncogene-Encoded Protein Studied by Molecular Dynamics Simulations. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 1994, 11 (5), pp.983-1002. ⟨10.1080/07391102.1994.10508047⟩. ⟨hal-02123785⟩
  • Norbert Garnier, N. Ostrowsky. Brownian dynamics in a confined geometry. Experiments and numerical simulations. Journal de Physique II, EDP Sciences, 1991, 1 (10), pp.1221-1232. ⟨10.1051/jp2:1991129⟩. ⟨jpa-00247585⟩
  • N Ostrowsky, Norbert Garnier. Quasi-elastic light scattering from an evanescent wave to probe particle/wall interactions.. Biochemical Society Transactions, Portland Press, 1991, 19 (2), pp.500-1. ⟨hal-02123775⟩
  • Nicole Ostrowsky, Norbert Garnier, Didier Sornette. THE USE OF DYNAMIC LIGHT SCATTERING IN STUDIES OF VESICLES INTERACTIONS. Journal of Dispersion Science and Technology, Taylor & Francis, 1989, 10 (3), pp.277-284. ⟨10.1080/01932698908943176⟩. ⟨hal-02123769⟩

Communication dans un congrès

  • Justine Largillière, Rémy Le Meur, David Guiguène, Norbert Garnier, Celine Landon, et al.. Vers une description cinétique et structurale complète du mécanisme d'échange de chaînes de la protéine HU d'Escherichia coli.. GERM 2019, May 2019, Oléron, France. ⟨hal-02361645⟩

Poster

  • Justine Largillière, Rémy Le Meur, David Guinguène, Norbert Garnier, Celine Landon, et al.. To a complete kinetics and structural description of the EcHU chain exchange system.. NMR : a tool for biology XITh, Jan 2019, Paris, France. ⟨hal-02362588⟩
  • Justine Largillière, Rémy Le Meur, David Guinguène, Norbert Garnier, Celine Landon, et al.. To a complete kinetics and structural description of the EcHU chain exchange system.. Journée Fédération de recherche “Physique et Chimie du Vivant”, Apr 2019, Orléans, France. ⟨hal-02362578⟩
  • Justine Largillière, Rémy Le Meur, Norbert Garnier, Celine Landon, A.F. Delmas, et al.. Native and Intermediate conformations of the three HU dimers of E.coli.. XXVIII ICMRBS 2018, Aug 2018, Dublin, Ireland. ⟨hal-02362585⟩
  • Justine Largillière, Rémy Le Meur, David Guinguène, Norbert Garnier, Celine Landon, et al.. To a complete kinetics and structural description of the EcHU chain exchange system.. 31e colloque Biotechnocentre, Oct 2018, Seillac, France. ⟨hal-02362818⟩

Chapitre d'ouvrage

  • Norbert Garnier, D. Genest, M. Genest. Motions and correlations of the transmembrane domain of a protein receptor studied by molecular dynamics simulation. Nonlinear excitations in biomolecules, Springer Berlin Heidelberg, pp.241-246, 1994. ⟨hal-02123780⟩
  • N. Ostrowsky, Norbert Garnier. Brownian dynamics close to a wall, measured by quasi-elastic light scattering from an evanescent wave. Progress in colloid and polymer science, 84, Steinkopff, Heildberg, pp.371-376, 1991, Progress in Colloid & Polymer Science. ⟨hal-02123777⟩

COSTE Franck

email : franck.coste[remplacer_par_at]cnrs-orleans.fr

Phone : +33 2.38.25.55.67

Engineer in chemical analysis within the thematic group DNA repair: structure, fonction and dynamic



36 documents

Article dans une revue

  • Karine Loth, Justine Largillière, Franck Coste, Françoise Culard, Céline Landon, et al.. New protein-DNA complexes in archaea: a small monomeric protein induces a sharp V-turn DNA structure. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-50211-2⟩. ⟨hal-02306224⟩
  • Serge Boiteux, Franck Coste, Bertrand Castaing. Repair of 8-oxo-7,8-dihydroguanine in prokaryotic and eukaryotic cells: Properties and biological roles of the Fpg and OGG1 DNA N -glycosylases. Free Radical Biology and Medicine, Elsevier, 2017, 107, pp.179 - 201. ⟨10.1016/j.freeradbiomed.2016.11.042⟩. ⟨hal-01618166⟩
  • François Hericourt, Françoise Chefdor, Ines Djeghdir, Mélanie Larcher, Florent Lafontaine, et al.. Functional Divergence of Poplar Histidine-Aspartate Kinase HK1 Paralogs in Response to Osmotic Stress. International Journal of Molecular Sciences, MDPI, 2016, 17 (12), ⟨10.3390/ijms17122061⟩. ⟨hal-01606532⟩
  • F. d'Heygere, A. Schwartz, F. Coste, B. Castaing, M. Boudvillain. ATP-dependent motor activity of the transcription termination factor Rho from Mycobacterium tuberculosis. Nucleic Acids Research, Oxford University Press, 2015, 43, pp.6099-60111. ⟨10.1093/nar/gkv505⟩. ⟨hal-01171219⟩
  • R. Le Meur, Françoise Culard, V. Nadan, S. Goffinont, F. Coste, et al.. The nucleoid-associated protein HU enhances 8-oxoguanine base excision by the formamidopyrimidine-DNA glycosylase. Biochemical Journal, Portland Press, 2015, 471 (1), pp.13-23. ⟨10.1042/BJ20150387⟩. ⟨hal-01216639⟩
  • Sylvie Baucheron-Monnier, Kunihiko Nishino, Isabelle Monchaux, Sylvie Canepa, Marie-Christine Maurel, et al.. Bile-mediated activation of the acrAB and tolC multidrug efflux genes occurs mainly through transcriptional derepression of ramA in [i]Salmonella enterica[/i] serovar Typhimurium. Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2014, 69 (9), pp.2400-2406. ⟨10.1093/jac/dku140⟩. ⟨hal-01129831⟩
  • A. Biela, F. Coste, F. Culard, M. Guerin, S. Goffinont, et al.. Zinc finger oxidation of Fpg/Nei DNA glycosylases by 2-thioxanthine: biochemical and X-ray structural characterization. Nucleic Acids Research, Oxford University Press, 2014, 42 (16), pp.doi: 10.1093/nar/gku613. ⟨10.1093/nar/gku613⟩. ⟨hal-01175522⟩
  • Sophie Réhault-Godbert, Valérie Labas, Emmanuelle Helloin, Virginie Hervé-Grépinet, Cindy Slugocki, et al.. Ovalbumin-related Protein X Is a Heparin-binding Ov-Serpin Exhibiting Antimicrobial Activities.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2013, 288 (24), pp.17285-95. ⟨10.1074/jbc.M113.469759⟩. ⟨hal-00845174⟩
  • Sylvie Baucheron, Franck Coste, Sylvie Canepa, Marie-Christine Maurel, Etienne Giraud, et al.. Binding of the RamR repressor to wild-type and mutated promoters of the RamA gene involved in efflux-mediated multidrug resistance in Salmonella enterica serovar Typhimurium.. Antimicrobial Agents and Chemotherapy, American Society for Microbiology, 2012, 56 (2), pp.942-8. ⟨10.1128/AAC.05444-11⟩. ⟨hal-00721770⟩
  • Franck Coste, Cordula Kemp, Vanessa Bobezeau, Charles Hetru, Christine Kellenberger, et al.. Crystal structure of Diedel, a marker of the immune response of Drosophila melanogaster.. PLoS ONE, Public Library of Science, 2012, 7 (3), pp.e33416. ⟨10.1371/journal.pone.0033416⟩. ⟨hal-00721829⟩
  • Yann Vei Le Bihan, Angeles M. Izquierdo, Franck Coste, Pierre Aller, Françoise Culard, et al.. 5-Hydroxy-5-methylhydantoin DNA lesion, a molecular trap for DNA glycosylases. Nucleic Acids Research, Oxford University Press, 2011, 39 (14), pp.6277-6290. ⟨10.1093/nar/gkr215⟩. ⟨hal-00614943⟩
  • Norbert Garnier, Karine Loth, Franck Coste, Rafal Augustyniak, Virginie Nadan, et al.. An alternative flexible conformation of the E. coli HU beta(2) protein: structural, dynamics, and functional aspects. European Biophysics Journal, Springer Verlag (Germany), 2011, 40 (2), pp.117-129. ⟨10.1007/s00249-010-0630-y⟩. ⟨hal-00602370⟩
  • Nada Basbous, Franck Coste, Philippe Leone, Renaud Vincentelli, Julien Royet, et al.. The Drosophila peptidoglycan-recognition protein LF interacts with peptidoglycan-recognition protein LC to downregulate the Imd pathway. EMBO Reports, EMBO Press, 2011, 12 (4), pp.327-333. ⟨10.1038/embor.2011.19⟩. ⟨hal-00608209⟩
  • Yumiko Mishima, Jessica Quintin, Vishukumar Aimanianda, Christine Kellenberger, Franck Coste, et al.. The N-terminal Domain of Drosophila Gram-negative Binding Protein 3 (GNBP3) Defines a Novel Family of Fungal Pattern Recognition Receptors. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2009, 284 (42), pp.28687-28697. ⟨10.1074/jbc.M109.034587⟩. ⟨hal-00525135⟩
  • Yumiko Mishima, Franck Coste, Vanessa Bobezeau, Nadège Hervouet, Christine Kellenberger, et al.. Expression, purification, crystallization and preliminary X-ray analysis of the N-terminal domain of GNBP3 from Drosophila melanogaster. Acta crystallographica. Section F, Structural biology communications, John Wiley & Sons Ltd,, 2009, 65 (Part 9), pp.870-873. ⟨10.1107/S1744309109014997⟩. ⟨hal-00525123⟩
  • Franck Coste, Matthias Ober, Yann-Vaï Le Bihan, Maria Angeles Izquierdo, Nadège Hervouet, et al.. Bacterial base excision repair enzyme Fpg recognizes bulky N7-substituted-FapydG lesion via unproductive binding mode.. Chemistry & Biology / Chemistry and Biology; CHEMISTRY & BIOLOGY, 2008, 15 (7), pp.706-17. ⟨10.1016/j.chembiol.2008.05.014⟩. ⟨hal-00408047⟩
  • F. Coste, M. Ober, T. Carrell, S. Boiteux, C. Zelwer, et al.. Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by Formamidopyrimidine-DNA glycosylase. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2006, 279 (42), pp.44074-44083. ⟨10.1074/jbc.M405928200⟩. ⟨hal-00114389⟩
  • S. Quevillon-Cheruel, N. Leulliot, M. Graille, N. Hervouet, F. Coste, et al.. Crystal structure of yeast YHR049W/FSH1, a member of the serine hydrolase family. Protein science : a publication of the Protein Society., 2005, 14, pp.1350-1356. ⟨hal-00088667⟩
  • Charles Ramstein, Nadège Hervouet, Franck Coste, Charles Zelwer, Jacques Oberto, et al.. Evidence of a thermal unfolding dimeric intermediate for the Escherichia coli histone-like HU proteins: thermodynamics and structure.. Journal of Molecular Biology, Elsevier, 2003, 331 (1), pp.101-21. ⟨hal-02127656⟩
  • Anne-Cécile Déclais, Jonathan Fogg, Alasdair Freeman, Franck Coste, Jonathan Hadden, et al.. The complex between a four-way DNA junction and T7 endonuclease I. EMBO Journal, EMBO Press, 2003, 22 (6), pp.1398-1409. ⟨10.1093/emboj/cdg132⟩. ⟨hal-02127667⟩
  • Franck Coste, William Shepard, Charles Zelwer. Description of ordered solvent molecules in a platinated decanucleotide duplex refined at 1.6 Å resolution against experimental MAD phases. Acta Crystallographica Section D: Biological Crystallography, International Union of Crystallography, 2002, 58 (3), pp.431-440. ⟨10.1107/S0907444901021709⟩. ⟨hal-02127650⟩
  • Franck Coste, N. Hervouet, J. Oberto, C. Zelwer, Bertrand Castaing. Crystallization and preliminary X-ray diffraction analysis of the homodimeric form alpha2 of the HU protein from Escherichia coli.. Acta Crystallographica Section D: Biological Crystallography, International Union of Crystallography, 1999, 55 (Pt 11), pp.1952-4. ⟨hal-02127644⟩
  • Franck Coste, J.-M. Malinge, L. Serre, W. Shepard, M. Roth, et al.. Crystal structure of a double-stranded DNA containing a cisplatin interstrand cross-link at 1.63 A resolution: Hydration at the platinated site. Nucleic Acids Research, Oxford University Press, 1999, 27 (8), pp.1837-1846. ⟨10.1093/nar/27.8.1837⟩. ⟨hal-02127640⟩

Communication dans un congrès

  • Sophie Rehault Godbert, Valérie Labas, Magali Chessé, Joël Gautron, Franck Coste, et al.. L’ovalbumin-related protein X (OVAX) est une protéine apparentée à l'ovalbumine qui possède des activités antibactériennes. 11.Journées de la Recherche Avicole et Palmidèdes à Foie Gras, Apr 2015, Tours, France. ⟨hal-02740850⟩
  • Daniel Marc, Franck Coste, Bertrand Castaing. Des cristaux pour la recherche de nouveaux antiviraux. Journées d'Animation Scientifique de la Fédération de Recherche d'Infectiologie (FéRI), Oct 2015, Orléans, France. 17 diapositives. ⟨hal-02792217⟩

Poster

  • Daniel Marc, Alan Wacquiez, Stéphane Goffinont, Virginie Nadan, Franck Coste, et al.. Interaction de la protéine NS1 des virus influenza A avec l’ARN : mécanismes impliqués dans la reconnaissance spécifique. 21. Journées Francophones de Virologie, Mar 2019, Lyon, France. Virologie, 23, 2019. ⟨hal-02737761⟩
  • F. Coste, G. Chaume, J.-B. Madinier, I. Rahioui, B. Castaing, et al.. Incorporation of trifluoromethylated pseudoproline in an entomotoxic knottin: effects on oxidative folding, 3D structure and biological activity. 21e réunion du Groupe Français des Peptides et des Protéines (GFPP21), May 2019, Amboise, France. ⟨hal-02893471⟩
  • Karine Loth, Justine Largillière, Franck Coste, Françoise Culard, Celine Landon, et al.. New protein-DNA complexes in archaea: a small monomeric protein induces a sharp V-turn DNA structure.. EuroMar 2018, Jul 2018, Nantes, France. ⟨hal-02362581⟩
  • Karine Loth, Justine Largillière, Franck Coste, Françoise Culard, Bertrand Castaing, et al.. New protein-DNA complexes in archaea: a small monomeric protein induces a V-turn structure.. XXVIII ICMRBS 2018, Aug 2018, Dublin, Ireland. ⟨hal-02362584⟩
  • Alan Wacquiez, Stéphane Goffinont, Virginie Nadan, Franck Coste, Emmanuel Kut, et al.. Structures et fonctions de la protéine NS1 des virus influenza pour la recherche de nouvelles cibles thérapeutiques. 31. Colloque Biotechnocentre, Oct 2018, Seillac, France. 2018. ⟨hal-02736195⟩
  • Alan Wacquiez, Franck Coste, Caroline Blondeau, Emmanuel Kut, Virginie Nadan, et al.. NS1 des virus Influenza A : approches structurales et fonctionnelles pour de nouvelles stratégies anti-virales. 20. Journées Francophones de Virologie 2018, Mar 2018, Paris, France. John Libbey Eurotext, Virologie, 22, 148 p., 2018. ⟨hal-02736544⟩
  • F. Coste, G. Chaume, J.-B. Madinier, I. Rahioui, B. Castaing, et al.. Incorporation of trifluoromethylated pseudoproline in an entomotoxic knottin: effects on oxidative folding, 3D structure and biological activity. 35th European Peptide Symposium (EPS35), Aug 2018, Dublin, Ireland. ⟨hal-02894161⟩
  • Karine Loth, Justine Largillière, Franck Coste, Françoise Culard, A.F. Delmas, et al.. New protein-DNA complexes in archaea: a monomeric protein induces a U-turn structure.. Structural biology and biophysics of RNA-protein complexes, Nov 2017, Orléans, France. ⟨hal-02362576⟩
  • Alan Wacquiez, Stéphane Goffinont, Virginie Nadan, Franck Coste, Emmanuel Kut, et al.. NS1 des virus influenza : relations structure-fonction pour la recherche de nouveaux anti-viraux. 30. Colloque Biotechnocentre, Oct 2017, Seillac, France. 100 p., 2017. ⟨hal-02737987⟩
  • Mathieu Galibert, Chrystelle Derache, Franck Coste, Hervé Meudal, Anne-Christine Lalmanach, et al.. Improvement of the chemical production of β-defensins including straightforward attribution of disulfide bridges. 18. Réunion du GFPP, May 2013, Sète, France. 1 p., 2013. ⟨hal-02805308⟩

Chapitre d'ouvrage

  • F. d'Heygère, A. Schwartz, F. Coste, B. Castaing, M. Boudvillain. Monitoring RNA Unwinding by the Transcription Termination Factor Rho from Mycobacterium tuberculosis. Methods in Mecular Biology, 1259, Springer, pp.293-311, 2015, RNA remodelling proteins (Boudvillain, ed), 978-1-4939-2213-0. ⟨10.1007/978-1-4939-2214-7_18⟩. ⟨hal-01174055⟩